diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.cpp b/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.cpp
deleted file mode 100644
index d335ed4adb..0000000000
--- a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.cpp
+++ /dev/null
@@ -1,178 +0,0 @@
-// Copyright 2024 Dolphin Emulator Project
-// SPDX-License-Identifier: GPL-2.0-or-later
-
-#include "VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.h"
-
-#include <algorithm>
-#include <array>
-#include <variant>
-
-#include "Common/Contains.h"
-#include "Common/Logging/Log.h"
-#include "Common/VariantUtil.h"
-
-#include "VideoCommon/AbstractGfx.h"
-
-namespace
-{
-bool IsQualifier(std::string_view value)
-{
-  static constexpr std::array<std::string_view, 7> qualifiers = {
-      "attribute", "const", "highp", "lowp", "mediump", "uniform", "varying",
-  };
-  return Common::Contains(qualifiers, value);
-}
-
-bool IsBuiltInMacro(std::string_view value)
-{
-  static constexpr std::array<std::string_view, 5> built_in = {
-      "__LINE__", "__FILE__", "__VERSION__", "GL_core_profile", "GL_compatibility_profile",
-  };
-  return Common::Contains(built_in, value);
-}
-
-std::vector<std::string> GlobalConflicts(std::string_view source)
-{
-  std::string_view last_identifier = "";
-  std::vector<std::string> global_result;
-  u32 scope = 0;
-  for (u32 i = 0; i < source.size(); i++)
-  {
-    // If we're out of global scope, we don't care
-    // about any of the details
-    if (scope > 0)
-    {
-      if (source[i] == '{')
-      {
-        scope++;
-      }
-      else if (source[i] == '}')
-      {
-        scope--;
-      }
-      continue;
-    }
-
-    const auto parse_identifier = [&] {
-      const u32 start = i;
-      for (; i < source.size(); i++)
-      {
-        if (!Common::IsAlpha(source[i]) && source[i] != '_' && !std::isdigit(source[i]))
-          break;
-      }
-      u32 end = i;
-      i--;  // unwind
-      return source.substr(start, end - start);
-    };
-
-    if (Common::IsAlpha(source[i]) || source[i] == '_')
-    {
-      const std::string_view identifier = parse_identifier();
-      if (IsQualifier(identifier))
-        continue;
-      if (IsBuiltInMacro(identifier))
-        continue;
-      last_identifier = identifier;
-    }
-    else if (source[i] == '#')
-    {
-      const auto parse_until_end_of_preprocessor = [&] {
-        bool continue_until_next_newline = false;
-        for (; i < source.size(); i++)
-        {
-          if (source[i] == '\n')
-          {
-            if (continue_until_next_newline)
-              continue_until_next_newline = false;
-            else
-              break;
-          }
-          else if (source[i] == '\\')
-          {
-            continue_until_next_newline = true;
-          }
-        }
-      };
-      i++;
-      const std::string_view identifier = parse_identifier();
-      if (identifier == "define")
-      {
-        i++;
-        // skip whitespace
-        while (source[i] == ' ')
-        {
-          i++;
-        }
-        global_result.emplace_back(parse_identifier());
-        parse_until_end_of_preprocessor();
-      }
-      else
-      {
-        parse_until_end_of_preprocessor();
-      }
-    }
-    else if (source[i] == '{')
-    {
-      scope++;
-    }
-    else if (source[i] == '(')
-    {
-      // Unlikely the user will be using layouts but...
-      if (last_identifier == "layout")
-        continue;
-
-      // Since we handle equality, we can assume the identifier
-      // before '(' is a function definition
-      global_result.emplace_back(last_identifier);
-    }
-    else if (source[i] == '=')
-    {
-      global_result.emplace_back(last_identifier);
-      i++;
-      for (; i < source.size(); i++)
-      {
-        if (source[i] == ';')
-          break;
-      }
-    }
-    else if (source[i] == '/')
-    {
-      if ((i + 1) >= source.size())
-        continue;
-
-      if (source[i + 1] == '/')
-      {
-        // Go to end of line...
-        for (; i < source.size(); i++)
-        {
-          if (source[i] == '\n')
-            break;
-        }
-      }
-      else if (source[i + 1] == '*')
-      {
-        // Multiline, look for first '*/'
-        for (; i < source.size(); i++)
-        {
-          if (source[i] == '/' && source[i - 1] == '*')
-            break;
-        }
-      }
-    }
-  }
-
-  // Sort the conflicts from largest to smallest string
-  // this way we can ensure smaller strings that are a substring
-  // of the larger string are able to be replaced appropriately
-  std::ranges::sort(global_result, std::ranges::greater{},
-                    [](const std::string& s) { return s.size(); });
-  return global_result;
-}
-
-}  // namespace
-
-void CustomPipeline::UpdatePixelData(std::shared_ptr<VideoCommon::CustomAssetLibrary>,
-                                     std::span<const u32>,
-                                     const VideoCommon::CustomAssetLibrary::AssetID&)
-{
-}
diff --git a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.h b/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.h
deleted file mode 100644
index 3a904e0858..0000000000
--- a/Source/Core/VideoCommon/GraphicsModSystem/Runtime/CustomPipeline.h
+++ /dev/null
@@ -1,42 +0,0 @@
-// Copyright 2024 Dolphin Emulator Project
-// SPDX-License-Identifier: GPL-2.0-or-later
-
-#pragma once
-
-#include <memory>
-#include <optional>
-#include <span>
-#include <string>
-#include <string_view>
-#include <vector>
-
-#include "VideoCommon/AbstractTexture.h"
-#include "VideoCommon/Assets/CustomAssetLibrary.h"
-#include "VideoCommon/Assets/MaterialAsset.h"
-#include "VideoCommon/Assets/ShaderAsset.h"
-#include "VideoCommon/Assets/TextureAsset.h"
-#include "VideoCommon/ShaderGenCommon.h"
-
-struct CustomPipeline
-{
-  void UpdatePixelData(std::shared_ptr<VideoCommon::CustomAssetLibrary> library,
-                       std::span<const u32> texture_units,
-                       const VideoCommon::CustomAssetLibrary::AssetID& material_to_load);
-
-  VideoCommon::CachedAsset<VideoCommon::MaterialAsset> m_pixel_material;
-  VideoCommon::CachedAsset<VideoCommon::PixelShaderAsset> m_pixel_shader;
-
-  struct CachedTextureAsset
-  {
-    VideoCommon::CachedAsset<VideoCommon::TextureAsset> m_cached_asset;
-    std::unique_ptr<AbstractTexture> m_texture;
-    std::string m_sampler_code;
-    std::string m_define_code;
-  };
-  std::vector<std::optional<CachedTextureAsset>> m_game_textures;
-
-  ShaderCode m_last_generated_shader_code;
-  ShaderCode m_last_generated_material_code;
-
-  std::vector<u8> m_material_data;
-};