diff --git a/Utilities/bin_patch.cpp b/Utilities/bin_patch.cpp
index 7e4c0709cd..933e148e2e 100644
--- a/Utilities/bin_patch.cpp
+++ b/Utilities/bin_patch.cpp
@@ -1449,7 +1449,7 @@ static usz apply_modification(std::vector<u32>& applied, patch_engine::patch_inf
 
 void patch_engine::apply(std::vector<u32>& applied_total, const std::string& name, std::function<u8*(u32, u32)> mem_translate, u32 filesz, u32 min_addr)
 {
-	applied_total.clear();
+	// applied_total may be non-empty, do not clear it
 
 	if (!m_map.contains(name))
 	{
diff --git a/rpcs3/Emu/Cell/PPUThread.cpp b/rpcs3/Emu/Cell/PPUThread.cpp
index 0f7b4bcabc..8da9cca8f0 100644
--- a/rpcs3/Emu/Cell/PPUThread.cpp
+++ b/rpcs3/Emu/Cell/PPUThread.cpp
@@ -4904,15 +4904,20 @@ bool ppu_initialize(const ppu_module<lv2_obj>& info, bool check_only, u64 file_s
 				// Potentially occuring during patches
 				// Avoid doing it for files with a single module such as most PRX
 
-				std::vector<be_t<u32>> addrs(info.funcs.size() + 1);
-				usz addr_index = 0;
+				std::vector<be_t<u32>> addrs;
 
 				for (const ppu_function& func : info.funcs)
 				{
-					addrs[addr_index++] = func.addr - reloc;
+					if (func.size == 0)
+					{
+						continue;
+					}
+
+					addrs.emplace_back(func.addr - reloc);
 				}
 
-				addrs.back() = ::size32(info.funcs);
+				// Hash its size too
+				addrs.emplace_back(::size32(addrs));
 
 				sha1_update(&ctx, reinterpret_cast<const u8*>(addrs.data()), addrs.size() * sizeof(be_t<u32>));
 			}